NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214919_10072504

Scaffold Ga0214919_10072504


Overview

Basic Information
Taxon OID3300023184 Open in IMG/M
Scaffold IDGa0214919_10072504 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3097
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001915Metagenome / Metatranscriptome617Y
F012670Metagenome / Metatranscriptome278Y
F012869Metagenome / Metatranscriptome276Y
F040590Metagenome161Y

Sequences

Protein IDFamilyRBSSequence
Ga0214919_100725042F040590GAGGMSAYGKVISGGKAMTNGLTKGINKKLEAFAGSHKRSAMLATAVGKTFNQNPLSDPHLNNINAAAKKSFTTPKLPSKV
Ga0214919_100725044F012670AGGAMKLPHPNDLIHGDIRPEGSHVSSDELKEKKRQYYQMKKAEKKALNIVTGQQPPKEPRPAVVQNPGGRPKSVVNRVTEYGALFNKLNDERAAKGLPPLKTAMEVLIDAMQSDELDIKDKAKIADKLAPFESSRAPIISIEHVNNVNKEEEVSADDALDDFLQALRKV
Ga0214919_100725045F001915AGGAGMENIWTLAHPLHDVDDIVEMADSVFGTEADGILTRDKNVFRKNVTITSTVQLFDKGREFLAVCRSWDEMRLVGYCWFDRGGYTTYANEEISNAKFHHVDLTLPAKTRVRLINQMIDQHILWASTWNIPVICSTSIRAEHNAFMRIHQKRGFTVNGSYAWIRTENAIKDLK
Ga0214919_100725046F012869AGGAMIAIHTKYISQTDNLGARIKAYTAASGSIKGFTATIAYPYELSAGHDVHFEAVKALVSKHNLDWDLKDMRYGGSADGKGFSFCFNDSKL
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Institute for Fundamental Biomedical Research
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