NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214919_10078166

Scaffold Ga0214919_10078166


Overview

Basic Information
Taxon OID3300023184 Open in IMG/M
Scaffold IDGa0214919_10078166 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2939
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (60.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023321Metagenome / Metatranscriptome210Y
F024533Metagenome205Y
F057311Metagenome / Metatranscriptome136Y
F081259Metagenome / Metatranscriptome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0214919_100781664F081259AGGAGGMLKKLIQWFVQPQITEIERYISAHNPKNTADVEMLINEFNYKRKLQCF
Ga0214919_100781665F023321AGGAMFLNQPQFPVFYTFNDVTRKAEDAAVKTIDFNKQLMDITIAHFDSITDNQFTTYTKKVATLNENVANDAKKIIKTEKSETGSRK
Ga0214919_100781666F057311GAGMTQRKSSKQKNLKLEVESKSRFYQPVCRNGWWIKFSTYRDHYILLMIVSRYTAQTIIRYYLDEDEAVAFINFVTTCNPNDLIESA
Ga0214919_100781668F024533N/AMPILKTCPRCGVQHQKRGPYCSRSCGNVREHTEEDKAIRAQKLVEYHQTPEGSATREKSSRIMSAKRKGEEWEEVGQEDFAVDIPDVHDYVSDYDDTWNRAEKW
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