NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214919_10083595

Scaffold Ga0214919_10083595


Overview

Basic Information
Taxon OID3300023184 Open in IMG/M
Scaffold IDGa0214919_10083595 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2803
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (58.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000473Metagenome / Metatranscriptome1097Y
F000671Metagenome / Metatranscriptome945Y
F012975Metagenome / Metatranscriptome275Y
F073544Metagenome / Metatranscriptome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0214919_1008359510F000671GAGGMEKILCYSCNKTKNKLNVRKSILIPINLLMCETCIASKFEPRWVVILAGRQLGSDAVKEFIIKKRYAGNDIAASELLV
Ga0214919_100835956F012975AGGAMLNLTLKGVEVFIERSKSKSQESYWDNYDLLIWKQNPGGFTNVKGMFRKDQWGITERIPVSEQGIWKLPSKYVKHFK
Ga0214919_100835958F000473AGGMEFINKDKDHFKYGINQWTGEPNKPVFYTPEMAKKIREIKKPDMSLQMDIVKYPDFLTIRLYEDNFLQYEGIKKEMVIDYVGKVKKLIESYGVRCELEGVPSARILRNN
Ga0214919_100835959F073544AGGVREYYEIIKIVFIHAERLYGSVESLGLYASKVKYQKDGIEIEEVLENDEFTIMDEIVFEHVEESN
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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