NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214919_10113539

Scaffold Ga0214919_10113539


Overview

Basic Information
Taxon OID3300023184 Open in IMG/M
Scaffold IDGa0214919_10113539 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2262
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (77.78%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032578Metagenome179N
F048305Metagenome148N
F049615Metagenome / Metatranscriptome146N
F053133Metagenome141Y

Sequences

Protein IDFamilyRBSSequence
Ga0214919_101135391F032578N/AGRAYDVNSEDILALNYIKTQIQSLDHERRDQYSTLLIDAQSAKRNINLSANKSHRRYEIARGILLLMQDGQFDRDLVKGICSHITKETYQKAGEALGHLNAVQAELFAQICYGITVDQVTIQYIPEQNTFRVQEESK
Ga0214919_101135394F049615AGGAGMTPDTVNLIAELEQRVSELSVALELVTEDRDNLRDAGNSLMTELEACRTTLVQAHSDISRLRVYLAQGAEL
Ga0214919_101135395F048305GAGMGMSDYDLHIKDKDFRIAELISETAQEQLAARKAQIEIAELCVEVARLNSHIQTLETTLAAMSGELHALRMDTQ
Ga0214919_101135396F053133GGAMMNPSEHYDRLHDHMMAIARERDWYKSEVNRLTDELHLAHEALKREFVHKGIIKAVAE
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