NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214919_10120836

Scaffold Ga0214919_10120836


Overview

Basic Information
Taxon OID3300023184 Open in IMG/M
Scaffold IDGa0214919_10120836 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2163
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006181Metagenome / Metatranscriptome379Y
F012446Metagenome / Metatranscriptome280N
F015582Metagenome / Metatranscriptome253Y
F082581Metagenome113N

Sequences

Protein IDFamilyRBSSequence
Ga0214919_101208361F006181N/AMKKHLIHVIYPDEAVNSFVMTTDMSTADILERVFAEWNHGSGMECEMFVNSKKRSLCVNDIVCVNGVYFQCASFGWNEVSLAYVVDLENEVSAHPSRTEGAWFALMDVMWERQNVVVA
Ga0214919_101208362F082581N/AMNNVTNDSNMNSTSTKTSKVGRPSTNLKLILNKSFTLKDLQNLNPDVKFVTIRAAVLRGLSNGKYTKLPRNVQTGRKGKPANIFINSKVYKANLANLAKSKVTINVNEPVTVDQPVTA
Ga0214919_101208363F012446N/AMKKLQKEFTGNYDKVGMNKFVQIKKENNVAIYQRFNTDGSHRSYEVFIVKVVPKGAPLPNGKTVEESYEQYPGANAFGKTAYDCRTIGQAEERFDQLVIKAKESAEAKEEAAKTGVRNRGRRGTSKKIKLDMTLNKGTKFTAKFLMSVLGVSQPVLFPILKQWEKEGTIKVSGTVKGEGKGRPSTEYIVV
Ga0214919_101208364F015582N/AMPDIDPELQAEQLEDAKYLEELNHYVNTLSAPSAESVALYRAKLSMLEDIHTEIRAKYPDFMPEYDVLSDPEYNQAVGKYQETTYSFSSRDLRSSSNSXK
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