NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214919_10196229

Scaffold Ga0214919_10196229


Overview

Basic Information
Taxon OID3300023184 Open in IMG/M
Scaffold IDGa0214919_10196229 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1522
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001808Metagenome / Metatranscriptome631Y
F067261Metagenome / Metatranscriptome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0214919_101962291F067261N/ARKLSSIISKLALYEITVIMFFLIDQFILNDIILTFFSVPFMLTKVVALVLSSIEVMSINENYKVVKGIDLWQSMKLLFARAKDIKDDINKLK
Ga0214919_101962293F001808N/AMRYLAIILLLSSCSAQYHLNKAIKKGYKCEQTGDTIRITTLDSIPVIINDTIVWEKFITTKDTIIKYKTTYFPRTRYQERLAYKLKVKTIYKDRIVEKAQAKATRPRPRGNLSLLFVGVGIGLLLSYLFKFTKDKYLL
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