Basic Information | |
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Taxon OID | 3300023210 Open in IMG/M |
Scaffold ID | Ga0233412_10000828 Open in IMG/M |
Source Dataset Name | Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_4_MG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Restricted |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).
Scaffold Components | |
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Scaffold Length (bps) | 17205 |
Total Scaffold Genes | 29 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (6.90%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations |
Source Dataset Sampling Location | ||||||||
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Location Name | Canada: British Columbia | |||||||
Coordinates | Lat. (o) | 48.6569 | Long. (o) | -123.4875 | Alt. (m) | Depth (m) | 100 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F004953 | Metagenome / Metatranscriptome | 417 | Y |
F023555 | Metagenome / Metatranscriptome | 209 | Y |
F025977 | Metagenome / Metatranscriptome | 199 | Y |
F048942 | Metagenome / Metatranscriptome | 147 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0233412_1000082810 | F025977 | N/A | MTEIFKKLADNGITPNAFYILNCIKEGLVPNTYVKASLEVTRLIRDSWLTENLELTDKSIIFTVEIDGYFKKSKKKTSTNLLGHHFMQNMEAYVHIFPNKKLSSGKYARVPAKNLESAFRWFFETYNYDWETIFQATQKYVAEYESKNYEYMRTAQYFLRKQNVDKSWDSDLAIYCEYLKDNPDDDKVYFSELIV |
Ga0233412_1000082812 | F023555 | N/A | MSGNLRKEKEKEFYMQHMDAFKAIGIADPFFTIKTAFFKKGKFGRQCQFFEWELKKEEDIYIEFYDNAYDGNGKIIDILPMNEDRSLFKLKYNPYFNEEYDVVDGVDSEGKPNNKYLVPVNEMVVVLSSGQEISYSLYEKRKEDAKNDLPELQKSLGLFPNFEKEYSPKVEGLALNAKDDSIIEICKRISNDFEKLATLLSKITLK |
Ga0233412_1000082828 | F004953 | N/A | MMLVQATWQESQTFRMIPISTDCPYVECIYDPATNVFVAISNIKKTTLHMLPKLDEYGQNITGNKGPKQERHKLEVFQEFYVEDKKATEELINLFAINADSFDYKKFMKEAKKA |
Ga0233412_100008288 | F048942 | N/A | MIKVKELKDDAIITIEVNKNFYLMTKAASFVILQSMNIPEKGDAYFKDIMSKEYNSLDEQQRAFYTIALLLAEIESQATKNKLYTEKEIAEPGEEGYIEPTLD |
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