NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0224530_1027629

Scaffold Ga0224530_1027629


Overview

Basic Information
Taxon OID3300023228 Open in IMG/M
Scaffold IDGa0224530_1027629 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Stordalen Mire, Sweden - C.B.S.T75
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)708
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3529Long. (o)19.0475Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003942Metagenome460N
F022571Metagenome213Y

Sequences

Protein IDFamilyRBSSequence
Ga0224530_10276291F003942N/AYVELIEVHSEYLECSFMVAKDEWETGKKLLNIFSPIDGNVLGFPHYRLHRDNISATSPKLPDGTTAQPGMAEAIEMQRQAGHAIYADHLSAMLYGNGLNPARS
Ga0224530_10276292F022571GGAMQITVWSVAADDDNGTYASVHETECAAYRRLIQLTVDADNKDDVAKAEAFMEAEDFDSLDEWIHEEVIEPLNTYSVDQHKIDVPTIPSSADDGKHITRRELASVLHGLRLMQEQWEPKMHGCT
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.