NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224516_1002913

Scaffold Ga0224516_1002913


Overview

Basic Information
Taxon OID3300023232 Open in IMG/M
Scaffold IDGa0224516_1002913 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Stordalen Mire, Sweden - IR.F.S.T0
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2818
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3533Long. (o)19.0466Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005112Metagenome / Metatranscriptome411Y
F016631Metagenome245Y

Sequences

Protein IDFamilyRBSSequence
Ga0224516_10029131F016631GAGGMNRLANLALSVGETLFHEAGRLLFGIALGRAKELLGTPQPVGTRQLALNRALQKKAVDGALLAGPRTGKEYAKFTLKKGLPTDQRPRTLAVENEPHSVDDFNGVIKEGYGKGEKRLIYSGTGVIKVGGSSQLGKINVHEHDAEKAGFHYDFVAKGVDPHTESFEVNIANGVLKGRYAFRQAFEENRYLVVRLKDNSVLVAKPDIHLKPPEFLNTIRQSDRPVSVEWKEDGSLANVAIHNLRAVYRSHRPDGESYYDKLPAIEDLRNRSPVWLARRLFQGPEQEGTVLRGELHHADGAARVGGILHALPEKSIRIQ
Ga0224516_10029133F005112N/AVKYKLFWAGCIAALCGLAFWKNSKSYPGKSKLWRLGKSAIDTGLVLLMVLYAPALLLMYVVIWLTSPFKNKIMQSTAAFASILAVSHLAGIVFEAVAVLGVFAMDLLTGQVVARMDKRERNKLTKAA
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