Scaffold Ga0224516_1005331

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0224516_1005331

Scaffold Ga0224516_1005331

Overview

Basic Information
Taxon OID	3300023232 Open in IMG/M
Scaffold ID	Ga0224516_1005331 Open in IMG/M
Source Dataset Name	Peat soil microbial communities from Stordalen Mire, Sweden - IR.F.S.T0
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1942
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location Name	Sweden: Norrbotten County, Stordalen Mire
Coordinates	Lat. (^o)	68.3533	Long. (^o)	19.0466	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F010591	Metagenome / Metatranscriptome	301	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0224516_10053312	F010591	GAGG	MNTGKEYIPVMLDSLQELFNEYGDKVTPTLLVELMERKLHRQMPMHVVAHQYTSLGFVTKRFNAQQKYCIIPNPELLAEIRAQFGRANSNTADNSKESINHSMQ

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