NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222634_1028590

Scaffold Ga0222634_1028590


Overview

Basic Information
Taxon OID3300023235 Open in IMG/M
Scaffold IDGa0222634_1028590 Open in IMG/M
Source Dataset NameSaline water microbial communities from Ace Lake, Antarctica - #50
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)908
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Ace Lake
CoordinatesLat. (o)-68.4725Long. (o)78.188Alt. (m)Depth (m)12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009218Metagenome / Metatranscriptome321Y

Sequences

Protein IDFamilyRBSSequence
Ga0222634_10285903F009218GAGGLQKTLLKMLDGMFFLKDEPESATGASWKFRRKLIFGSYRLGFAMIIFGAVTFLVDQWGVGVTLITGGVSLISIITTAYTVSASWQDGKNNQD
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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