NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222660_1028724

Scaffold Ga0222660_1028724


Overview

Basic Information
Taxon OID3300023239 Open in IMG/M
Scaffold IDGa0222660_1028724 Open in IMG/M
Source Dataset NameSaline water microbial communities from Ace Lake, Antarctica - #549
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)956
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Ace Lake
CoordinatesLat. (o)-68.4725Long. (o)78.188Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F037002Metagenome168N

Sequences

Protein IDFamilyRBSSequence
Ga0222660_10287241F037002N/AMSYVLDTAYSNQVIFLNSNNCNFKSIDGIGSYVYNLQTPIQKPTNTMMLLSITDAQIPNVSPNVNSSNNQISFYIPTFSKYFTITVGDSDGDAVYSADEFVNEVNEKILPNALEQFYLYGTYEFSRAKVKWISNYSFQIINTASYPTTCIDLLGFRKDRNNNLQQTEDALLSSTVNPSFHITMPSSVNFTGARYIFVKFKNISVNNLNSRGITDNAMVRIDNNAPSGYMIFYRPSEVQRFIVGKQTISNIEFTLTDTFGDELNIFSNDAQITLKIEYMYKPEMRSFEEGTINYE
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Institute for Fundamental Biomedical Research
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