Scaffold Ga0224524_1068403

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0224524_1068403

Scaffold Ga0224524_1068403

Overview

Basic Information
Taxon OID	3300023254 Open in IMG/M
Scaffold ID	Ga0224524_1068403 Open in IMG/M
Source Dataset Name	Peat soil microbial communities from Stordalen Mire, Sweden - C.F.S.T75
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	637
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location Name	Sweden: Norrbotten County, Stordalen Mire
Coordinates	Lat. (^o)	68.3533	Long. (^o)	19.0466	Alt. (m)		Depth (m)	0
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010139	Metagenome / Metatranscriptome	308	Y
F074808	Metagenome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0224524_10684031	F074808	N/A	DADVGYEDLFNWIVNDIPTGGSLRMLHTQIDTNCEPMDFYLPSARRNTVVISADGATFEYFEVPVRLIESYNP
Ga0224524_10684032	F010139	GAGG	MADRVVMQSPQGEVKEVEATAEALSPLMSSGWHQAPADHKPAVPAEEEK

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.