NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224547_1000070

Scaffold Ga0224547_1000070


Overview

Basic Information
Taxon OID3300023255 Open in IMG/M
Scaffold IDGa0224547_1000070 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Stordalen Mire, Sweden - 717 P2 10-14
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)22039
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (80.77%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3534Long. (o)19.0472Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002209Metagenome / Metatranscriptome583Y
F005455Metagenome / Metatranscriptome400Y
F010670Metagenome / Metatranscriptome300Y

Sequences

Protein IDFamilyRBSSequence
Ga0224547_100007018F005455GGAGMQDEAEITISGVKLTHEESMTIRVAVDTLANVLADGLEENETRALTDLYLSSLSRIQTLLESREPRKQ
Ga0224547_100007020F002209N/AMQSERDSFRTAVGFETKSYNFFMRTTIYPKVARRLGLLSWNKEYYTLDGMLYEQRGVDETGKYATYANWISVAIEHENDSSRAHEKMNKLQSFNAPLKVLITYAAEGAASETLLRKYENLIKASDVFNDIATLRQQLVILGTPKTVREWRYYAYENDGFVLMLPN
Ga0224547_10000709F010670GGAGGMKQFAIIVLATVTLMQSALSVAGDKSTDSRAKPNSFVPHPHTNSHVYGAPIQPAIVGHSKTSHHKQTPKKRSSSPKKSG
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