Scaffold Ga0224547_1000316

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0224547_1000316

Scaffold Ga0224547_1000316

Overview

Basic Information
Taxon OID	3300023255 Open in IMG/M
Scaffold ID	Ga0224547_1000316 Open in IMG/M
Source Dataset Name	Peat soil microbial communities from Stordalen Mire, Sweden - 717 P2 10-14
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	7065
Total Scaffold Genes	15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (60.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location Name	Sweden: Norrbotten County, Stordalen Mire
Coordinates	Lat. (^o)	68.3534	Long. (^o)	19.0472	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F062072	Metagenome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0224547_10003167	F062072	AGCAGG	VTNRGSTTTDDGVFPQGWASGESRRSIRVSLTLVIEAQGIAEHLTCAGETIIVNLHGALISTSVALTVGMKIEIHVYLTGKRADAKVVYVDPEKPMLSGIELAVPRNIWGISLATINWYEADFE

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