NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224547_1000871

Scaffold Ga0224547_1000871


Overview

Basic Information
Taxon OID3300023255 Open in IMG/M
Scaffold IDGa0224547_1000871 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Stordalen Mire, Sweden - 717 P2 10-14
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3810
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3534Long. (o)19.0472Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001137Metagenome / Metatranscriptome767Y
F019183Metagenome231Y

Sequences

Protein IDFamilyRBSSequence
Ga0224547_10008713F019183AGGAGMDEGRKRVLVIAASILAARKLVNWDGRPSPALESAIADAIAIAERIMARIDSRWPSLVK
Ga0224547_10008717F001137N/AVRAELETKLRSEESQREDLNRRVEDYFREITQLRERNQELETEMAKVARVGKLEEVSFADEARTWAGICVSEKLPKNGDFILAYRDPSGVPVQPKMLLDNKDKAAVAESDLDKLVRDAKERNVPVGIIVAKEESQLRQVDKETRWGQKDGVWILRTTRQWLPRDLDVLKPLFERMRVQGSDFLDKNVALSEEVRRTFADLDRVEGELKKAAKAIGAATGLVTKYRGRLQELCDNAPTRKMPPTSERSAARINQ
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