NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224547_1015390

Scaffold Ga0224547_1015390


Overview

Basic Information
Taxon OID3300023255 Open in IMG/M
Scaffold IDGa0224547_1015390 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Stordalen Mire, Sweden - 717 P2 10-14
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)972
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3534Long. (o)19.0472Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005767Metagenome / Metatranscriptome391Y
F011162Metagenome / Metatranscriptome294Y

Sequences

Protein IDFamilyRBSSequence
Ga0224547_10153901F011162GGAGGMRIANILSGLAVLFTTLAYAHLLHHYFLNAGEAVHSPPFLAGMVIGVVIGIFSFIGGCLLLRRGR
Ga0224547_10153903F005767N/AATKSREELAVRDLKLQKLTSVLSGQARSDITAINTISGLLLDNYGAFLPRQGHAYAEQMKEAAAQIERLRQDLIGAPRSEAA

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