NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224535_1041524

Scaffold Ga0224535_1041524


Overview

Basic Information
Taxon OID3300023258 Open in IMG/M
Scaffold IDGa0224535_1041524 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Stordalen Mire, Sweden - 717 E1 30-34
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1069
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0469Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F047435Metagenome149N
F066360Metagenome126N

Sequences

Protein IDFamilyRBSSequence
Ga0224535_10415242F047435AGGAGMSKLTLLAIVGLIYIGVVKLAYFMLSVFFILFFGMSVWELIRTARQPAKHPAATQ
Ga0224535_10415243F066360AGGAGMVITPTNSGSLLAGAGLGFFAWGAFLKADKVPWLKVLLTTRRKDETLAWVNKNRGLSLLGLESVNYGIHGILDPNSVFFALGNTVVNLLFLWIFLPFRIARAAKKRQRDVLKGVA

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