NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224551_1041944

Scaffold Ga0224551_1041944


Overview

Basic Information
Taxon OID3300023259 Open in IMG/M
Scaffold IDGa0224551_1041944 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Stordalen Mire, Sweden - 717 P3 20-24
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)795
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3535Long. (o)19.0472Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F078269Metagenome / Metatranscriptome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0224551_10419441F078269GGAGMISHVKRWPASFGYHQVCSKARRARLHRHTPTTVCRLMCVARPPLPRAPLLQRHYPLSSLLWAHARVLWPPCPFDLSLVGIGLRRLRHPRLVHRTVLALTVWLLSKVSCPVRRVLAWCMWSISSQATAAFTTDGWLGALPVFPQATSRGPQISTLQAFSSITTLSFTCPPGRSHAVSRDEGFVARAFLEFVSSSQVEPVTRLNRPISGTGFAPASHKVLLAAPVGFGDIHPTHRFRSVR
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