NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247772_1000012

Scaffold Ga0247772_1000012


Overview

Basic Information
Taxon OID3300023264 Open in IMG/M
Scaffold IDGa0247772_1000012 Open in IMG/M
Source Dataset NamePlant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L151-409C-6
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)180275
Total Scaffold Genes180 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)132 (73.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.3Long. (o)-89.38Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F065927Metagenome127Y
F076755Metagenome / Metatranscriptome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0247772_1000012136F076755N/AMQPVVKGMVQVHSVTYRIVRVRAGQYDVVRLLDDVRVGGFSLGMRREAIIEGDAPEVIREVARAALQGGRTTWAPRRLLA
Ga0247772_100001270F065927GAGGMDSNTRPVLKSIESSPVHSIQALDHFVTSGGMRVSYYALALDQVPADFFADPDGTWSYELLSRAAGFASHSGVAIGALKAPFNGHPEGAAVVTLNALTRPYVAIVECPIAYEFVEQPDNSASSAA
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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