Basic Information | |
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Taxon OID | 3300023264 Open in IMG/M |
Scaffold ID | Ga0247772_1000019 Open in IMG/M |
Source Dataset Name | Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L151-409C-6 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 150909 |
Total Scaffold Genes | 112 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 88 (78.57%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts) |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Wisconsin | |||||||
Coordinates | Lat. (o) | 43.3 | Long. (o) | -89.38 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F045452 | Metagenome / Metatranscriptome | 153 | Y |
F047388 | Metagenome / Metatranscriptome | 150 | Y |
F067906 | Metagenome / Metatranscriptome | 125 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0247772_1000019100 | F047388 | N/A | MWVLSESHPEAWRCVHGARWRLLESYALARQEGLASPVGLVADLRYPRAVQVLRQLMLSPSTHSVDPIYAGCVERGALCSALMSIAPKLAELLFSRGDEAGAWTALVLQDEEVVLSSTWQELISGIPARASVSQRSERRR |
Ga0247772_100001977 | F045452 | GGAG | MSDTIALDTLRADEARKKLLRDIIEIKKMGNQMIENTETAINKAPVMLGIGVVALVGIAVFAGRRPKRPTFPGFRRERSFFAEAARSAALSALGILSGRLTQRLLSSALDEKPQVARA |
Ga0247772_100001981 | F067906 | AGGAG | MAWASCHALGADDWIVVAQQSDEAAPEFTHRVRQRALRLRKEGAQLDSVDVYAGPDQDGRRVTARREVIQELGEQMAMGGRLTLWSGSDDERGDAELAAILAQFAPILAERQIAMNHQACEPDERSGVRHAVPTKASGELGVEFEEFV |
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