NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247760_1000142

Scaffold Ga0247760_1000142


Overview

Basic Information
Taxon OID3300023272 Open in IMG/M
Scaffold IDGa0247760_1000142 Open in IMG/M
Source Dataset NamePlant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L171-409R-4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)75391
Total Scaffold Genes63 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)49 (77.78%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.3Long. (o)-89.38Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F045452Metagenome / Metatranscriptome153Y
F067906Metagenome / Metatranscriptome125Y

Sequences

Protein IDFamilyRBSSequence
Ga0247760_100014255F045452GGAGVSDTTALDTQRADEARSKLVRDILEIKKMGNKMIENTETAIQKAPVMLGLGVVALVGIAVLASRRQKPTFPGFKRERSFFAEAARSAALSALGILSGRLTQRLLANALDDKLDDKPRTA
Ga0247760_100014259F067906AGGAMSRRARLTVLELGASATAWASCHGLGADDWIVVAQQSDEAATDFTRRVRQRAQRLRKEDAQIDSVDMYAGPDSDWLSSAARREVIEDLGVQMAKGGRLTLWSGSGDARGNADLAAILTQFGPILAERQIAMNHQACEAEQRSGVRHAVPTRPEELDLEFEEFA
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