NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255763_1013476

Scaffold Ga0255763_1013476


Overview

Basic Information
Taxon OID3300023273 Open in IMG/M
Scaffold IDGa0255763_1013476 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041406US metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5246
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015087Metagenome / Metatranscriptome257N
F041071Metagenome / Metatranscriptome160N

Sequences

Protein IDFamilyRBSSequence
Ga0255763_10134761F041071GGAMEDKSIALVTSALISSGLVSETKAGALAIHLGKGAKNWCIRQMKPGNADETRIQIQKFNSKLWMEYVARKNYIFDTTESGLVRHKTPLVEKQERLLTIRNQMVGETFVPPIKNISKRLLDQARLKRLLVLVKKDIEEIENEMKGMSMINQKLERYFIRRPSFKPKIFINQEDEYLDLPDITKRKRILKRLLHLLNMRRISKMEKIREKLTHVRRDTMTKLVQIQRDIYINSNECWTRAERAS
Ga0255763_10134765F015087GGTGGVPLLPSGLKKDPAYIVMYGYSVWLVPLNRRLLTKVYKFRHIPHITISTNHEDIPDPVNLGQLYDVVDFKPYGLIGKQYKFDPLNAVGWECTVEDLSIKHTPHMSHVYSFYPYDKVYSVYPTPIRLIAEVCVADTRSSDWEEWKIIKEKLPR

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