NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255813_10091165

Scaffold Ga0255813_10091165


Overview

Basic Information
Taxon OID3300023280 Open in IMG/M
Scaffold IDGa0255813_10091165 Open in IMG/M
Source Dataset NameCombined Assembly of Gp0238881, Gp0242115
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Toronto
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)540
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Bioreactor → Aerobic → Unclassified → Unclassified → Food Waste → Metagenomes From Anaerobic Digester Of Solid Waste

Source Dataset Sampling Location
Location NameDurham, Ontario, Canada
CoordinatesLat. (o)44.1763Long. (o)-80.8185Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F093243Metagenome / Metatranscriptome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0255813_100911651F093243N/AMLLPYIPAEDQDAYILTKELTRIEFKYHRGRIRVKDNPYIVEREC
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Institute for Fundamental Biomedical Research
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