NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222688_1000631

Scaffold Ga0222688_1000631


Overview

Basic Information
Taxon OID3300023293 Open in IMG/M
Scaffold IDGa0222688_1000631 Open in IMG/M
Source Dataset NameSaline water microbial communities from Ace Lake, Antarctica - #1165
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7780
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (15.38%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → unclassified bacterial viruses → environmental samples → uncultured marine phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Ace Lake
CoordinatesLat. (o)-68.4725Long. (o)78.188Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F087244Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0222688_10006318F087244N/AMPLPHFTQISNVGSPGGPGTLPDEVVYLNLFEVTFILPVILQAQGRDPILLLENATKISLGALTSFDIQNVKQRFKYSTREFLTTPTITSGEIMIPFQVNVNQQGSMENWTTMKAWYDLVFNSQNGALHYKSDIIGTIIVNQHDKKGVVLRRVTFQNCQLKILTGWELDWSSNNIVDSVDATFVYDYFIDEYIDQNFTISPPIISGY
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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