NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222670_1019357

Scaffold Ga0222670_1019357


Overview

Basic Information
Taxon OID3300023294 Open in IMG/M
Scaffold IDGa0222670_1019357 Open in IMG/M
Source Dataset NameSaline water microbial communities from Ace Lake, Antarctica - #732
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1284
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Ace Lake
CoordinatesLat. (o)-68.4725Long. (o)78.188Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025595Metagenome / Metatranscriptome201N
F060352Metagenome / Metatranscriptome133N
F076488Metagenome / Metatranscriptome118N
F095503Metagenome / Metatranscriptome105N

Sequences

Protein IDFamilyRBSSequence
Ga0222670_10193571F060352GGAGGMKKVSKLKKDSVFICSVCAEGFVHKKPDTLVGKLGPIPVQFCKPCFKKVMKHD
Ga0222670_10193574F025595AGGAGGMTVDINGLSTKLEVLTSIKENIQDGKTDTAIDMVNQMIEMEPAPGQKRPVADALDHHQIMQKGIVR
Ga0222670_10193575F076488AGGAGMRTEYDEVKEILVKHDVDLDGDIDYMMETIVYGEPLFQELFEYFIGDMPYDVAKGRADLMSDEWILDRVQALGLIKEEA
Ga0222670_10193576F095503N/AVLVAGGFVAGIKILTFLNMPKEIVFPVMWIAFIVLMAYKWYSMKYDWSKEDKAYDRASKKYTNKLKELK
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