Scaffold Ga0256702_10381786

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0256702_10381786

Scaffold Ga0256702_10381786

Overview

Basic Information
Taxon OID	3300023300 Open in IMG/M
Scaffold ID	Ga0256702_10381786 Open in IMG/M
Source Dataset Name	Food waste microbial community from Durham, Ontario, Canada. Combined Assembly of Gp0238881, Gp0242100
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Toronto
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	553
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Tripsacinae → Zea → Zea mays	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Bioreactor → Aerobic → Unclassified → Unclassified → Food Waste → Metagenomes From Anaerobic Digester Of Solid Waste

Source Dataset Sampling Location
Location Name	Durham, Ontario, Canada
Coordinates	Lat. (^o)	44.1763	Long. (^o)	-80.8185	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F065522	Metagenome	127	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0256702_103817862	F065522	N/A	VQRCADFEEKYSQSQTELGQVSTALDDANALSSSLHAQLDSEKVTYKTVPCLVVVLLFAWFLKELTFARRKKSVSLLLLVTILTGCIVILAIR

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