NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209414_1000657

Scaffold Ga0209414_1000657


Overview

Basic Information
Taxon OID3300023301 Open in IMG/M
Scaffold IDGa0209414_1000657 Open in IMG/M
Source Dataset NameHypersaline microbial communities from Lake Vida, Antarctica - Brine Hole Two >0.2 micron (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16777
Total Scaffold Genes47 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)41 (87.23%)
Novel Protein Genes11 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)8 (72.73%)
Associated Families11

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Unclassified → Hypersaline → Hypersaline Microbial Communities From Lake Vida, Antarctica

Source Dataset Sampling Location
Location NameLake Vida, Antarctica
CoordinatesLat. (o)-77.38861Long. (o)161.931111Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000447Metagenome / Metatranscriptome1128Y
F000808Metagenome / Metatranscriptome882Y
F003965Metagenome / Metatranscriptome459Y
F006385Metagenome / Metatranscriptome374Y
F011386Metagenome / Metatranscriptome291Y
F014129Metagenome / Metatranscriptome265Y
F018929Metagenome / Metatranscriptome232Y
F034573Metagenome174Y
F063707Metagenome / Metatranscriptome129Y
F083720Metagenome / Metatranscriptome112Y
F099311Metagenome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0209414_100065713F063707N/AMTLKKQGMSNTMPKCLDCGNDTKFWYLEVSHKLGIYDSKGELEDVEDDYYDDVETSSGSCGKCESKNIEGKL
Ga0209414_100065727F000808GGAMEYTYSLTTSYDGELFHTMKVSDMLTAAEAWEKCVDFGDAKEYATYNLSDPTGKMYSKTFYRNGNVSIK
Ga0209414_100065730F006385AGGAGVILDTGTLIGICIALTGSIIAMVSFYLFNVQLQKEIHRLQIALRTERLKK
Ga0209414_100065734F083720GAGMSANIYTIKTLLVGKKYHSKTLQGEILSAIIHPKAVWYKGCETYLVEIEPYSGFNTWGRKTYRTIAVKVGE
Ga0209414_100065740F003965AGGMITLEINKCLEHNPMKSAISMVGDDQFTFCQDCEQNIERWYNDTDSDCLPMWTDWKVSN
Ga0209414_100065742F000447N/AMGYIEIFRLDEQGAGWVDLSEATPSELLDLEIGLLQEGVL
Ga0209414_100065743F014129AGGTGGMTTQIKEITLENVSPSEANRIVCVFCSDYSSEYFCVNCNEYKGLMTLGEWLAYTEESWVS
Ga0209414_100065746F011386GGAGGMKVTLTSMQGNTRDINLMTKEEVLDFIELYKSTLHKSERVRVTCDLLGINGYLQGVA
Ga0209414_10006575F018929N/AMQRSKWLNAMTNEELSKALNQESYRVWDMAKVIKNQDYHDGVVKGIKMAAKYVAKLDTNQ
Ga0209414_10006578F034573AGGAGMYRISKAVITSKEEKSAIAIGKILSDFHLDLEKVGYYLARATPYLVYRRALEVLESAQFQQDTVEQKRIEYNYDRLF
Ga0209414_10006579F099311AGGAMAAKKNKLKTIPYLETWDTRYGKSQRIVYRKGGKFVDNTSLTALKRGERVISR
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Institute for Fundamental Biomedical Research
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