Scaffold Ga0209414

Basic Information
Taxon OID	3300023301 Open in IMG/M
Scaffold ID	Ga0209414_1001297 Open in IMG/M
Source Dataset Name	Hypersaline microbial communities from Lake Vida, Antarctica - Brine Hole Two >0.2 micron (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300023301 Open in IMG/M

Scaffold ID

Ga0209414_1001297 Open in IMG/M

Source Dataset Name

Hypersaline microbial communities from Lake Vida, Antarctica - Brine Hole Two >0.2 micron (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	11842
Total Scaffold Genes	27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (11.11%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (16.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

11842

Total Scaffold Genes

27 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

3 (11.11%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (16.67%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Unclassified → Hypersaline → Hypersaline Microbial Communities From Lake Vida, Antarctica

Source Dataset Ecosystem

Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Unclassified → Hypersaline → Hypersaline Microbial Communities From Lake Vida, Antarctica

Source Dataset Sampling Location
Location Name	Lake Vida, Antarctica
Coordinates	Lat. (^o)	-77.38861	Long. (^o)	161.931111	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Vida, Antarctica

Coordinates

Lat. (^o)

-77.38861

Long. (^o)

161.931111

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F008854	Metagenome	327	Y
F022552	Metagenome	214	Y
F027681	Metagenome	194	Y
F048628	Metagenome	148	Y
F051533	Metagenome	144	Y
F080610	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209414_100129710	F080610	N/A	MNAKDKILHLWNSRFFSRVIIFALLALVFIPIGCKSKKMVTEKAEITRIDTVEVFKYVYDTIIQKEREVVTKPVYFETEIPCDEDQSGKVGSGNNYTEYEIKDGKIYLKTNIDSISNNWKSYYKSQFKQDSIAVHQQLREKYKSTSVEKVYVYPLWIYLVCILGGLLLLWKVLNFFGLIR
Ga0209414_100129716	F022552	N/A	MTHTETINGKEVIFETVRVAERIEHSTEHFMAGYTGDQLTHTAIGSFAIGSDDFEEISYIEEEED
Ga0209414_100129721	F051533	N/A	MKAKQEKQEKIEISTQSLKDLAIYLSGVKDGKGNLLPLGTIVLDDLWDVIKYLDGDPRFTAKRDKK
Ga0209414_100129726	F048628	GAG	MNHIQFMAAEARINQIISDQITSTEIMKPRIDINEFESILLNLAERLNDRMEHLDPNKSGQDDEIHQLISIQSFLSEVHSEVFTYDRDRAKGKYTNK
Ga0209414_10012976	F008854	N/A	MEHLNTNELLKIIDEVRQEVCDRDLTALTYECHKGSRVSNNYEVNKNGSNIFKIEIKNQL
Ga0209414_10012977	F027681	N/A	MRNWIIITFFLYREFKIFGKTISRLRAATPTVIAFFFGVISQTIIGSEHWLVILIEWIPFIICIILGFYYYKYKPVKYDELIDWQQQFKYLSKPDQIGTKDETFPDGVYYTIEMKRLDKIHFNYFSEDNVDVIKGLAPTLVTIIGAIIYVLLQ

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209414_1001297

Overview

Ecosystem & Geography

Associated Families

Sequences