NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209414_1002850

Scaffold Ga0209414_1002850


Overview

Basic Information
Taxon OID3300023301 Open in IMG/M
Scaffold IDGa0209414_1002850 Open in IMG/M
Source Dataset NameHypersaline microbial communities from Lake Vida, Antarctica - Brine Hole Two >0.2 micron (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7745
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (8.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Flavobacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Unclassified → Hypersaline → Hypersaline Microbial Communities From Lake Vida, Antarctica

Source Dataset Sampling Location
Location NameLake Vida, Antarctica
CoordinatesLat. (o)-77.38861Long. (o)161.931111Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011458Metagenome291Y
F027681Metagenome194Y

Sequences

Protein IDFamilyRBSSequence
Ga0209414_10028502F027681N/AMRNWIITTFFLYREFKIFGKTISRLRAATPTVIAFFLGVILQTIIGSEHWLVLLIEWIPFAICIFLGFYYYKYKPVKYDELLDWQQQYKYLSKPDQIGTKDETFPDGFYYTSELKRLGKTHLAYFGKANNVDVIKGLAPFWITAIGSIIYVLLQ
Ga0209414_10028503F011458N/AMKHLILLIALISFSANAQKNMVLIEGFDKQEISVSDSLTHAAVKEFYWWSNRSRVDFETNLPKFQAVKVVAMSRAKMYHFDKGVIYINSYLNDYPNFKRIVIFHAILHEIYGVPKTKGSSLDVMNEHFYVNDRFEEKYKYRRTHFKDIKLGMEAFEKVKPLNTKN
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