NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209414_1004252

Scaffold Ga0209414_1004252


Overview

Basic Information
Taxon OID3300023301 Open in IMG/M
Scaffold IDGa0209414_1004252 Open in IMG/M
Source Dataset NameHypersaline microbial communities from Lake Vida, Antarctica - Brine Hole Two >0.2 micron (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6114
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (27.27%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Unclassified → Hypersaline → Hypersaline Microbial Communities From Lake Vida, Antarctica

Source Dataset Sampling Location
Location NameLake Vida, Antarctica
CoordinatesLat. (o)-77.38861Long. (o)161.931111Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022145Metagenome215Y
F034486Metagenome / Metatranscriptome174Y
F085177Metagenome / Metatranscriptome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0209414_10042523F034486N/AMEENQSKNQKKIALAQSVHAPVIIELIKDCMGTNPQLIGKTQWATVVNAVRLEVQGNILNAMVKYLDEIRNGSLSGKE
Ga0209414_10042524F022145N/AMKLEMVHYPVKNNIMSKKPVVLKRPNYSIEVAYSKKAIKDKLMKFISKSGDEFVISAEEMTSILIGQVNTEVLEATFVDTEKINIVEVGRQLECVLDKDMKKGEKIRINYTHPLPIEFALIEESMKIAKINMDAPAFTLTKDYIKKVRNKITPEMENFSKTFYKSFKNLKENN
Ga0209414_10042528F085177N/AMSAGTIQDYAIIVNNVVKKIAPKVSPTVKPEYLDFMTKVANSERIYTDVGVTGLGMAEIIGDGGIGASDAPIQGFSKNYFQMHFTKKVRLSFQTNFFLFEGAAAKIKGTVKSKLIEGKDAIEHAKNYLSQSLLAQGFNTSFTWTPINGVGSPQPISTIGADAVEYWSEVHPREDGGAAWSNVIVDGATNSPVFSYSALLAARRLHSIKKDGRGMPLISDLDTLIVRKGSNSAQTAKAIMGTLAKGIAPNQTNIFNNAPATETFKVVELSPYQGLAMDGLMWGMFDSKMKNEDYGFLYIEALPTRAEPAVVDLLGNQDLVMNFNSLATFGASDLRGFMWSDGDGTTV
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