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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300023301 Open in IMG/M |
| Scaffold ID | Ga0209414_1011980 Open in IMG/M |
| Source Dataset Name | Hypersaline microbial communities from Lake Vida, Antarctica - Brine Hole Two >0.2 micron (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3132 |
| Total Scaffold Genes | 8 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Salegentibacter → unclassified Salegentibacter → Salegentibacter sp. BDJ18 | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Unclassified → Hypersaline → Hypersaline Microbial Communities From Lake Vida, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Vida, Antarctica | |||||||
| Coordinates | Lat. (o) | -77.38861 | Long. (o) | 161.931111 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F008280 | Metagenome | 336 | Y |
| F008854 | Metagenome | 327 | Y |
| F011458 | Metagenome | 291 | Y |
| F027681 | Metagenome | 194 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209414_10119803 | F027681 | N/A | MRNWIIFTFFLYREFKIFGRTFSRLRAVTPTVIAFFFGVISQTIIGSEHWLVLLIEWIPFIICIFLGFYYYKYKPVKYDELLDWQQQFKYLSKPDQIGTKDETFPDGIYYKSELKRLSKTHLAYFGKAKNVDVIKGLAPFWITVIGSIIYALLQ |
| Ga0209414_10119805 | F008854 | N/A | MSIPISKKDLLRVIDEVRQEVCDKELTALTYECHNGDRFSNNYEVNEYGSIRFKFEITI |
| Ga0209414_10119806 | F011458 | N/A | MKHLILLIALISFSVNAQNKITLIVGFDKQEITFSDSLSYKSTKEFYWWSNRNRVDFETDLPKFQSVKVVAMPRAKMYHFDKGVIYINSYLNDYPNFKRIVIFHAILYEIYEVPKTKGSSLDVMNEHFYVTDEFEENYKYRRKYFKDIKMAMAAFEIHKPLRTKN |
| Ga0209414_10119807 | F008280 | N/A | MEGYKIYIKDRDSLIRQTMEGTGKYNPVKDINGDYFIFEQEFKQCGLGVLAEYVPPTPTETI |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |