NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209414_1018632

Scaffold Ga0209414_1018632


Overview

Basic Information
Taxon OID3300023301 Open in IMG/M
Scaffold IDGa0209414_1018632 Open in IMG/M
Source Dataset NameHypersaline microbial communities from Lake Vida, Antarctica - Brine Hole Two >0.2 micron (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2340
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Unclassified → Hypersaline → Hypersaline Microbial Communities From Lake Vida, Antarctica

Source Dataset Sampling Location
Location NameLake Vida, Antarctica
CoordinatesLat. (o)-77.38861Long. (o)161.931111Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008280Metagenome336Y
F008854Metagenome327Y
F027681Metagenome194Y

Sequences

Protein IDFamilyRBSSequence
Ga0209414_10186322F027681N/AMRNWIIVTFFLYREFKIFGRTFSRVRAATPIVIAFFFGVISQTIIGSETWLVLLIEWIPFIICIFLGFYYYKYKPVKYNELLDWQQQFKYLKKPDQIGTKDETFPDGFYYTSELKRLSKTHLAYFGKAKNVDVLKGLAPLWITVIGSIIYALLQ
Ga0209414_10186323F008854N/AMSIPISKNELLKILDEVRKEVCDREFKTLTYECHNGDRFSNNYEITEYGNTRFKFEITI
Ga0209414_10186324F008280N/AMEGYKIYNYQRDVLVQQTMEGTGKYNPVKDINGDYFIFEQEYKQCGLGLLTEYFAPIMDEII
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