NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209414_1024285

Scaffold Ga0209414_1024285


Overview

Basic Information
Taxon OID3300023301 Open in IMG/M
Scaffold IDGa0209414_1024285 Open in IMG/M
Source Dataset NameHypersaline microbial communities from Lake Vida, Antarctica - Brine Hole Two >0.2 micron (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1954
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Unclassified → Hypersaline → Hypersaline Microbial Communities From Lake Vida, Antarctica

Source Dataset Sampling Location
Location NameLake Vida, Antarctica
CoordinatesLat. (o)-77.38861Long. (o)161.931111Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008854Metagenome327Y
F027681Metagenome194Y

Sequences

Protein IDFamilyRBSSequence
Ga0209414_10242852F008854N/AMSIPISKNDLLRVIDEVRKEVCDKELTALTYECHNGDRFSNNYEVNENGSTRFKIEITI
Ga0209414_10242854F027681N/AMRNWIIFTFFLYREFKIFGRTFSRVRAATPTVIAFFFGVISQTIIGSEHWLVLLIEWIPFAICIFLGFYYYKYKPVKYDEILDWRQQFKYLSKPDQIGTKDETFPDGIYYKSELKRLSKTHLAYFGKAKNVDVIKGLAPTILTAIGSIIYVLLQ
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