NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0256681_10418858

Scaffold Ga0256681_10418858


Overview

Basic Information
Taxon OID3300023311 Open in IMG/M
Scaffold IDGa0256681_10418858 Open in IMG/M
Source Dataset NameCombined Assembly of Gp0281739, Gp0281740, Gp0281741
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterLaval University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1916
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Thermokarst Lakes Summer Vs Winter

Source Dataset Sampling Location
Location NameSAS2a, Kuujjuarapick, Canada
CoordinatesLat. (o)55.1491Long. (o)-77.4866Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F037052Metagenome168Y
F053035Metagenome / Metatranscriptome141Y

Sequences

Protein IDFamilyRBSSequence
Ga0256681_104188584F053035GGAGMMNPFELRFSIFNTAKDLMVKQHEANMAAWEVLNKTSKEAVELAPKFPTMEEIIDKAIEINTFVSGQTTKELTGLVKKMAGVSVIF
Ga0256681_104188585F037052AGGMAAKPKSKYVFKPEMCDRMIELGKSGASQKMMFAEIGINKNVADTWKKNHDEFADSLETAKTHSQAYWEREILANVNNKGFNSRLAEIALRGQFADDYRETRDTKVDAKIEVKIDFQKEIGDLIKALKS
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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