NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0256681_11148762

Scaffold Ga0256681_11148762


Overview

Basic Information
Taxon OID3300023311 Open in IMG/M
Scaffold IDGa0256681_11148762 Open in IMG/M
Source Dataset NameCombined Assembly of Gp0281739, Gp0281740, Gp0281741
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterLaval University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2934
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Thermokarst Lakes Summer Vs Winter

Source Dataset Sampling Location
Location NameSAS2a, Kuujjuarapick, Canada
CoordinatesLat. (o)55.1491Long. (o)-77.4866Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014361Metagenome / Metatranscriptome263Y

Sequences

Protein IDFamilyRBSSequence
Ga0256681_111487622F014361AGGMSLLSAFNTQLVNLFDELCTSFPEDKDIKMATEAIKGARKINPRLILDLFVEHVYKGCSQSIYERNSVAFRAYVHKTISTQFNEMITALSIFDKYWDTMGQNNQDVIWQYLKVLCVLSEKAISQP
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