NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0256681_12137082

Scaffold Ga0256681_12137082


Overview

Basic Information
Taxon OID3300023311 Open in IMG/M
Scaffold IDGa0256681_12137082 Open in IMG/M
Source Dataset NameCombined Assembly of Gp0281739, Gp0281740, Gp0281741
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterLaval University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1607
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Thermokarst Lakes Summer Vs Winter

Source Dataset Sampling Location
Location NameSAS2a, Kuujjuarapick, Canada
CoordinatesLat. (o)55.1491Long. (o)-77.4866Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010014Metagenome309Y
F018866Metagenome232Y

Sequences

Protein IDFamilyRBSSequence
Ga0256681_121370821F018866N/AMDVPRHTVKRTDAISLSTMLEDGARDAYMRPWHRIERGLRLNRLRIYTEELSLQHHMSKEEKEKFFEFLQKSLDKKLLNTIKVVQYDQDTQRIQGIKGLELKRTAEGVLKWALVAKKTKPEGTRKKKKEEVVFEPMKIEETPHIK
Ga0256681_121370823F010014GAGGMAQPIIHDDHTLSAIAAFPMPRFIGRTRRENNPYDTINARQFEHWQTSGKYGTTNRPDLNQQAPFYDMMPNTSRTSDHSYRAQPRFDASGDRGGQNAFFDKYDTAADARNMTRELRASVYEDKNTGFQKESSGLLQRQFDIQWLNPTVAEQQAKAAEQLRPKMDDIRLFYHNKPLDQ
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