Scaffold Ga0256681_12524098

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0256681_12524098

Scaffold Ga0256681_12524098

Overview

Basic Information
Taxon OID	3300023311 Open in IMG/M
Scaffold ID	Ga0256681_12524098 Open in IMG/M
Source Dataset Name	Combined Assembly of Gp0281739, Gp0281740, Gp0281741
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Laval University
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1732
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium CSP1-4	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Thermokarst Lakes Summer Vs Winter

Source Dataset Sampling Location
Location Name	SAS2a, Kuujjuarapick, Canada
Coordinates	Lat. (^o)	55.1491	Long. (^o)	-77.4866	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F012538	Metagenome	280	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0256681_125240981	F012538	GAG	MTEKGPSRALASLNRDLLAVLVSEEAAEIGRSVAQIVRGEGWHEAKASAVLVDALVAWLGPAAVHPLGFYANGTGPVEVVARVGNYYITGHGIEDEQDLTINCCQRHRARFSQSRLEDMDLMVPNNRFTMANPLAKRAAERVGALLTEEIDPEIARVVLGA

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