NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222710_1004113

Scaffold Ga0222710_1004113


Overview

Basic Information
Taxon OID3300023429 Open in IMG/M
Scaffold IDGa0222710_1004113 Open in IMG/M
Source Dataset NameSaline water microbial communities from Ace Lake, Antarctica - #1696
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3633
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (62.50%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Ace Lake
CoordinatesLat. (o)-68.4725Long. (o)78.188Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F056353Metagenome / Metatranscriptome137Y

Sequences

Protein IDFamilyRBSSequence
Ga0222710_10041133F056353N/AMGYGKNGSNLPDQYRIEKKFAWMPVVSSSKKRVWLTYYYIRRTYHDDNGKPPIYRLNWDYIFTKNEYLLELLK
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