NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0257022_1012562

Scaffold Ga0257022_1012562


Overview

Basic Information
Taxon OID3300023481 Open in IMG/M
Scaffold IDGa0257022_1012562 Open in IMG/M
Source Dataset NameMarine microbial mat from Loihi Seamount, Hawaii, USA - Ku'kulu Base Individual Assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterWestern Washington University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1651
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Microbial Mats → Marine → Marine Microbial Mats From Loihi Seamount, Hawaii, Usa

Source Dataset Sampling Location
Location NameLoihi Seamount, Hawaii, USA
CoordinatesLat. (o)18.903Long. (o)-155.257Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017655Metagenome / Metatranscriptome239Y
F017843Metagenome / Metatranscriptome238N

Sequences

Protein IDFamilyRBSSequence
Ga0257022_10125622F017655N/AMVNGNPFSKGVSLGHIIATIGIVVAGFTFIYDLREAIAILQYKGDTVEQRLERIQQRTDNQFDQIMDHLERLESKIDEMIIERNE
Ga0257022_10125623F017843GAGGMKKLLCALMMLPMSLFAADFDRIGVDVSGFNSDGVRFGIANNGSASLGIAGDGYTFTFDQDDNDMAVSAYGVELSRSDSKKVGVGYGAGIGIFDGGVHYNWMSSGDHVVGGGTTLTVGGFDLATAADWNLTASDITGTVGTSMDLWGAQASAVSKWDIDDFSYDGLELDAGYAIPVAAGLHITPSVGVDFDSDWSRGDATASVAVILSFGRSATP
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