NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0257035_100817

Scaffold Ga0257035_100817


Overview

Basic Information
Taxon OID3300023505 Open in IMG/M
Scaffold IDGa0257035_100817 Open in IMG/M
Source Dataset NameHuman gut microbial communities from healthy child feces in Northridge, California, USA - CDI_151B
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of California, Irvine
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)27480
Total Scaffold Genes30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)28 (93.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Gut → Child Gut Microbiome

Source Dataset Sampling Location
Location NameUSA: Northridge, California
CoordinatesLat. (o)34.2381Long. (o)-118.5301Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F077319Metagenome117N
F082715Metagenome / Metatranscriptome113N

Sequences

Protein IDFamilyRBSSequence
Ga0257035_10081710F082715AGGAGMMKFMKRALSLLISAMLLLGCFALAEETPLLPIAIVSYDLTDEATTATLSALIEPKEGALTRWERVVLSDGREAWVICQFDQTTMSNAWSRVIDAETQEVLQEDTTDTGFFATAQARWESAKGIYALWSIQDKMLFDRLYAMAPCYGEPVEGDLTQEEALAAALNVTGLTAADYDAVGYGYIMGSSEQNGTWQVFFVKGSEVVSTVNLDARDATILLVEPDEEGNG
Ga0257035_10081722F077319GGAGMQENTVCAANCTVQEKHGGQKIMLIRNATLQMSATERACMDVRVMNGCVWEMGAALVKGLYESETDLCGDVLMPGRILETPVPAADEKALRLLCRRLYREGVRYFVADCPADALLRVQNRPERRGALPVTALPNPEPLRSGTGMPLTRWTAAGEFVGMMDEHSGD
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