Scaffold Ga0257035_102000

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0257035_102000

Scaffold Ga0257035_102000

Overview

Basic Information
Taxon OID	3300023505 Open in IMG/M
Scaffold ID	Ga0257035_102000 Open in IMG/M
Source Dataset Name	Human gut microbial communities from healthy child feces in Northridge, California, USA - CDI_151B
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of California, Irvine
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	12234
Total Scaffold Genes	15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	14 (93.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Gut → Child Gut Microbiome

Source Dataset Sampling Location
Location Name	USA: Northridge, California
Coordinates	Lat. (^o)	34.2381	Long. (^o)	-118.5301	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F082714	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0257035_1020003	F082714	AGGA	MVVGIRFAADAPVRTVLQAFLPIFSTVDVDFLVREYWVCTFGNGLPESRFTAQEMRRALDALTPDEHAELFTIYALPHDAPGTPPSSCEDFCARGFTMAFYAYDGDGYALLAQSEEQVRAVIETLRKAVEIRSAEAVERETLARWAF

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