NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247515_102542

Scaffold Ga0247515_102542


Overview

Basic Information
Taxon OID3300023564 Open in IMG/M
Scaffold IDGa0247515_102542 Open in IMG/M
Source Dataset NameMetatranscriptome of spruce roots microbial communities from Bohemian Forest, Czech Republic - CRI4 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1987
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location
Location NameCzech Republic: South Bohemian Region
CoordinatesLat. (o)49.0427Long. (o)13.6161Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F068861Metagenome / Metatranscriptome124Y
F097372Metagenome / Metatranscriptome104N

Sequences

Protein IDFamilyRBSSequence
Ga0247515_1025421F097372N/AVNSIASGLLNFNYSTIEMSDESIAHTIRNILKQCNSTTISIGHTEGHFLSSRQFAVLEECADTLENLESVAGVDTPTTSVITQASSEEDGFRARRLELARELKQKQIRLTAAAPGDRSQINLEIGKLLSERARLDKLIKQFDAATIA
Ga0247515_1025422F068861N/AMPSVTASRLIAEYGSDQDYKFAGAVQVKTATTLTTTFGAVMRYEPWTNTGARELLKHHPIGVWKELSVRLAPRPGIYGRMCTFYGGWAAAGVVTPTTAEEMVALHGAIDVTYGGTGDPGTVKVQIPCEFDDTMKDLLKGPDNDNSRPVFFYAFTETDVVDKPANSDRFMLTFKGKYTLHGRY
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