NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0228683_1001998

Scaffold Ga0228683_1001998


Overview

Basic Information
Taxon OID3300023694 Open in IMG/M
Scaffold IDGa0228683_1001998 Open in IMG/M
Source Dataset NameMetatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 31R (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1918
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.8313Long. (o)-121.9047Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F080818Metagenome / Metatranscriptome114N
F082723Metagenome / Metatranscriptome113N

Sequences

Protein IDFamilyRBSSequence
Ga0228683_10019981F082723N/AVIATAAVMVASTASAFDLGNGLTAGAEVDMNYTTGVELWALEAKPELAFSTMGAALSVGSTFDLMNLNGDDTFKGLDFDASYPIAGTGLTAYGEVSTDADFEFGDIKVGASFKF
Ga0228683_10019982F080818AGGMVSPHFLYGKEYIMNKLLITLAFILTTTAAQAESKDLIISLPCDTFVNVVEIMEEDDEHLMFIGDTAIRETTTGRFYKAGLYVWMNLDTQTSSITIMFPDTTMCLLSSNTSFHTYDGEQPWDYMNKKDDL
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