NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0228706_1036556

Scaffold Ga0228706_1036556


Overview

Basic Information
Taxon OID3300023697 Open in IMG/M
Scaffold IDGa0228706_1036556 Open in IMG/M
Source Dataset NameMetatranscriptome of freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 3-17_Aug_MT (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)613
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)33.9301Long. (o)-83.5517Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016159Metagenome / Metatranscriptome249Y

Sequences

Protein IDFamilyRBSSequence
Ga0228706_10365561F016159N/AMKQGYVHPYHSDKYPVMFSHFHYMKTLFEAVGPEQVSPHYETLSRSRRGVLFIFLYIGSISTLSRLGGWSHNEWLRGMIWHHEFLIAFYLGYAEVRHFTYFLGPKFTVFYNVYSRYETQQLCTMWADVTEEEQLKHLRHTKEQMEYVRIQQEWD
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