NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0232122_1008195

Scaffold Ga0232122_1008195


Overview

Basic Information
Taxon OID3300023709 Open in IMG/M
Scaffold IDGa0232122_1008195 Open in IMG/M
Source Dataset NameMetatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011501CT (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2819
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Mucoromycota → Mucoromycotina → Mucoromycetes → Mucorales → Cunninghamellaceae → Hesseltinella → Hesseltinella vesiculosa(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032641Metagenome / Metatranscriptome179N
F042805Metagenome / Metatranscriptome157N

Sequences

Protein IDFamilyRBSSequence
Ga0232122_10081953F042805AGGMKVTFPGWLGWFEENKVSSIENCFIEIKDVYAEKLLWPSIYMEEDGYDSDDDLERIWHYSDAKSYLEEYLEKNGYNRDYYHIMHVEATFHEPGKEPRELTFYVKEITCEIEHPGGNSPDEMFKWWVCENKYGDFDEYGYDVPSEHYRIFLYCLNQAWQDVKALPECITKLIDKKRSTIKNDSI
Ga0232122_10081957F032641N/AVEGQRQRLDVMRALRAGEEAPELEINDNQMGLLQAGRAFAMVCLFGIFFMVTTSPLVSKKRIFPMKSFTFLLAFLAFLAFTLQIYLMRSIKKGITSADRTMRFSLAVIYMIFMVMSLFVMFNY
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