NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0232122_1068793

Scaffold Ga0232122_1068793


Overview

Basic Information
Taxon OID3300023709 Open in IMG/M
Scaffold IDGa0232122_1068793 Open in IMG/M
Source Dataset NameMetatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011501CT (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)857
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027314Metagenome / Metatranscriptome195Y
F037937Metagenome / Metatranscriptome167N

Sequences

Protein IDFamilyRBSSequence
Ga0232122_10687931F027314N/AMACNVTLADISYSCDDVAIGGIVELHVANKSDAESALTGVGSADRAITAATAVTGVSQISFNNKDGFSVFSEVKTVSADGIVATVPTISVELPKMTADKITALNNISKGGAELVAFVKTAAGTYHVCGLDYGLYAGTVDANSGTGRAEKNRFQLTLTGDEKGLSYGIEGADEAAIKAIFDTIVGN
Ga0232122_10687932F037937N/AYYGMEVAHFASMPANEFIIAAPQNLVMLTDDYNDVRAIDMKYEAELSSDKIWGQFKLGFSYLKGEEIVYAKNFA
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