NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222666_1040694

Scaffold Ga0222666_1040694


Overview

Basic Information
Taxon OID3300024048 Open in IMG/M
Scaffold IDGa0222666_1040694 Open in IMG/M
Source Dataset NameSaline water microbial communities from Ace Lake, Antarctica - #655
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)889
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Epsilonproteobacteria → unclassified Campylobacterota → Epsilonproteobacteria bacterium JGI 0002006-B18(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Ace Lake
CoordinatesLat. (o)-68.4725Long. (o)78.188Alt. (m)Depth (m)14
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010230Metagenome306Y

Sequences

Protein IDFamilyRBSSequence
Ga0222666_10406941F010230N/APSLVSINGNELRLLQLYQVEVKLVPLLVSINGNELRLVQFCQVEVKLVPLLVSINGNELRLVQFCQVEVKLVPSLVSINGNELRLVQYCQVEVKLVPLLVSINGNELRLVQDRQVKVKSVPLLVSINGNEVRLLQLVQVARK
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