NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0233359_1045666

Scaffold Ga0233359_1045666


Overview

Basic Information
Taxon OID3300024049 Open in IMG/M
Scaffold IDGa0233359_1045666 Open in IMG/M
Source Dataset NameSoil microbial communities from Shasta-Trinity National Forest, California, United States - GEON-P30
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)516
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil And Plant Litter Microbial Communities From Temperate Forests In California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)40.5253Long. (o)-123.5031Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F056027Metagenome / Metatranscriptome138Y

Sequences

Protein IDFamilyRBSSequence
Ga0233359_10456662F056027GAGMTKTITLYMCLAASSLSLDARAQDERKYTEGPVTLV
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