NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255050_10002234

Scaffold Ga0255050_10002234


Overview

Basic Information
Taxon OID3300024052 Open in IMG/M
Scaffold IDGa0255050_10002234 Open in IMG/M
Source Dataset NameSeawater microbial communities from Jervis Inlet, British Columbia, Canada - JV7_2_5
Source Dataset CategoryMetagenome
Source Dataset Use PolicyRestricted
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).


Scaffold Components
Scaffold Length (bps)2862
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (42.86%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → unclassified viruses → Circular genetic element sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location
Location NameCanada: British Columbia
CoordinatesLat. (o)50.0528611Long. (o)-123.8211389Alt. (m)Depth (m)425
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005319Metagenome405Y
F005580Metagenome396Y
F057768Metagenome136Y
F058540Metagenome135Y
F090277Metagenome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0255050_100022341F057768N/AMSATTITRTFDATPTDKAYFSLTDNMLSSSLGNIQVPQGATRISRVDCAFDTTNAKGYQVVCRLL
Ga0255050_100022342F005580GGAGMKKGIPHPSVTGMASGLTIANYLNTGTTTKGGKALDGVIKDISDGQLGQAFNTLSSNAINMIASDAGRKTLVTAGGIAVLGAFARKQWPTLKLGGSKLYFRL
Ga0255050_100022344F058540N/AMDASNKELVKPDISSPLKKRDSYLKVYDDDMTLVTVDLAEECKIDTDKGIKDGVRVTCRLVDFDKERDPCYIAQQEPKTKESYSTSSFYLLKDFKTASHWPKEGIFYWVWKASDGLRWEEVP
Ga0255050_100022345F005319GAGMNDQTFAIIWILSFFLYLLIYTYHIPRMTQKRIEDWLRDSESDDTLLLALEVIVKRIREQTLVDFEEFMLPQARKNLQKFFSGAMGNVAKEMKEGEEGSKMKMMHDIANELSDQPWYVQMLGSKLMPILAKAESKPNIKPDIGMGLQK
Ga0255050_100022347F090277N/AMIGIDWSSIGASETLSYTIQVDGINLFVEKSVIGDVGVVGAIMQPKMFEFVIPPNSTVKVLGTQSNNNGSISCILTGYKI

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